Nuclear Factor Nf-Kappa-B P105 Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nuclear Factor Nf-Kappa-B P105 Subunit
  Conformer 1
(PDB)
1u42 (A)
  Conformer 2
(PDB)
1u36 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 54 1.31   249 - 306
2 42 0.51   307 - 348

Sequence


           ____________________________________________________304______________________________________________                    
 1u42(A) : SNLKIVRMDRTAGCVTGGEEIMLLCDKVQKDDIQIRFYEEgVWEGFGDFSPTDVHRQFAIMFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE                    
         :                                                                                                                          
 1u36(A) : *NLKIVRMDRTAGCVTGGEEIWLLCDKVQKDDIQIRFYEEEvWEGFGDFSPTDVHRQFAICFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE                    
           ____________________________________________________304______________________________________________                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
178.9
Translation
(A)
0.4
Closure
(%)
98.5
Bending Residues
( green )
  304 - 308
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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