Nucleocapsid Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nucleocapsid Protein
  Conformer 1
(PDB) 		2iqh (C)
  Conformer 2
(PDB) 		2iqh (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 391 0.84   23 - 395   441 - 487
2 31 3.29   396 - 440

Sequence


           ________________________________________________________________________________________________________________________ 
 2iqh(C) : NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDtGGPIYRRVDGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGM 
         :                                                                                                                          
 2iqh(B) : NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDtGGPIYRRVDGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2iqh(C) : DPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSVAHKSCLPAC 
         :                                                                                                                          
 2iqh(B) : DPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGIN----------rRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSVAHKSCLPAC 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________________393______ 
 2iqh(C) : VYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTsSG 
         :                                                                                                                          
 2iqh(B) : VYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTsSG 
           _______________________________________________________________________________________________________________393______ 

           ______________________438___________________________________________________                                             
 2iqh(C) : QISIQPTFSVQRNLPFDRPTIMAAsDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPSFDMSNEGSYFF                                             
         :                                                                                                                          
 2iqh(B) : QISIQPTFSVQRNLPFDRPTIMAAsDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPSFDMSNEGSYFF                                             
           ______________________438___________________________________________________                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.6
Translation
(A) 		1.7
Closure
(%) 		95.1
Bending Residues
( green ) 		  393 - 396
  438 - 441
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download