Nucleocapsid Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nucleocapsid Protein
  Conformer 1
(PDB) 		2iqh (B)
  Conformer 2
(PDB) 		2iqh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 389 0.83   23 - 394   442 - 487
2 33 2.3   395 - 441

Sequence


           ________________________________________________________________________________________________________________________ 
 2iqh(B) : NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDtGGPIYRRVDGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGM 
         :                                                                                                                          
 2iqh(A) : NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDtGGPIYRRVDGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2iqh(B) : DPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGINrRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSVAHKSCLPACVYGSAVASGY 
         :                                                                                                                          
 2iqh(A) : DPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGINrRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSVAHKSCLPACVYGSAVASGY 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________393________________ 
 2iqh(B) : DFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTsSGQISIQPTFSV 
         :                                                                                                                          
 2iqh(A) : DFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTsSGQISIQPTFSV 
           _____________________________________________________________________________________________________393________________ 

           __________427_____________________________________________________                                                       
 2iqh(B) : QRNLPFDRPTIMAAsDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPSFDMSNEGSYFF                                                       
         :                                                                                                                          
 2iqh(A) : QRNLPFDRPTIMAAsDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPSFDMSNEGSYFF                                                       
           __________427_____________________________________________________                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.5
Translation
(A) 		-3.5
Closure
(%) 		91.4
Bending Residues
( green ) 		  393 - 396
  427 - 442
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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