Nucleoside Diphosphate Kinase II

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nucleoside Diphosphate Kinase II
  Conformer 1
(PDB)
1s59 (F)
  Conformer 2
(PDB)
1s59 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 107 0.31   85 - 119   153 - 207   213 - 229
2 38 0.46   120 - 152   208 - 212

Sequence


           ______________________________________119______________________________152______________________________________________ 
 1s59(F) : SMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHG 
         :                                                                                                                          
 1s59(C) : ****VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHG 
           ______________________________________119______________________________152______________________________________________ 

           ______207__212___________________                                                                                        
 1s59(F) : SDSPENGKREIGLWFKEGELCKWDSALATWLRE                                                                                        
         :                                                                                                                          
 1s59(C) : SDSPENGKREIGLWFKEGELCKWDSALATWLRE                                                                                        
           ______207__212___________________                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.3
Translation
(A)
0.0
Closure
(%)
72.9
Bending Residues
( green )
  119 - 120
  152 - 153
  207 - 208
  212 - 213
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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