Octamer-Binding Transcription Factor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Octamer-Binding Transcription Factor 1
  Conformer 1
(PDB) 		1e3o (C)
  Conformer 2
(PDB) 		1hf0 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 70 2.64   8 - 105
2 52 0.44   106 - 157

Sequence


           ________________________________________________________________________74______________________________________________ 
 1e3o(C) : EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAE--kRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 
         :                                                                                                                          
 1hf0(B) : *****LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAErKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIR 
           ________________________________________________________________________74______________________________________________ 

           ______________                                                                                                           
 1e3o(C) : VWFSNRRQKEKRIN                                                                                                           
         :                                                                                                                          
 1hf0(B) : VWFSNRRQKEKRI*                                                                                                           
           ______________                                                                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		81.7
Translation
(A) 		3.9
Closure
(%) 		94.8
Bending Residues
( green ) 		  74 - 107
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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