Octamer-Binding Transcription Factor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Octamer-Binding Transcription Factor 1
  Conformer 1
(PDB) 		1hf0 (B)
  Conformer 2
(PDB) 		1oct (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 66 0.88   11 - 102
2 55 0.43   103 - 157

Sequence


           _____________________________________________________________________102________________________________________________ 
 1hf0(B) : *LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAErKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFS 
         :                                                                                                                          
 1oct(C) : DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAErKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFC 
           _____________________________________________________________________102________________________________________________ 

           ___________                                                                                                              
 1hf0(B) : NRRQKEKRI**                                                                                                              
         :                                                                                                                          
 1oct(C) : NRRQKEKRINP                                                                                                              
           ___________                                                                                                              

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.0
Translation
(A) 		-0.1
Closure
(%) 		38.2
Bending Residues
( green ) 		  102 - 106
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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