Ornithine Transcarbamylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ornithine Transcarbamylase
  Conformer 1
(PDB) 		1akm (C)
  Conformer 2
(PDB) 		1duv (H)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 257 0.94   4 - 160   163 - 228   260 - 271   306 - 311   315 - 330
2 59 0.71   161 - 162   229 - 259   272 - 305   312 - 314

Sequence


           ________________________________________________________________________________________________________________________ 
 1akm(C) : SGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYA 
         :                                                                                                                          
 1duv(H) : SGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________160_________________________________________________________________228____________ 
 1akm(C) : SVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWV------ 
         :                                                                                                                          
 1duv(H) : SVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAK 
           _____________________________________160_________________________________________________________________228____________ 

           ________________259_________271_______________________________305___311______________________                            
 1akm(C) : -----rIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK                            
         :                                                                                                                          
 1duv(H) : EKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK                            
           ________________259_________271_______________________________305___311______________________                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.9
Translation
(A) 		0.3
Closure
(%) 		92.0
Bending Residues
( green ) 		  160 - 163
  228 - 229
  259 - 260
  271 - 272
  305 - 306
  311 - 312
  314 - 315
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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