Orotidine 5'-Phosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Orotidine 5'-Phosphate Decarboxylase
  Conformer 1
(PDB) 		2cze (A)
  Conformer 2
(PDB) 		2czd (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 127 0.72   28 - 43   51 - 157   159 - 162
2 61 0.56   5 - 27   44 - 50   158 - 158   174 - 203

Sequence


           _________________________27_____________42_____49_______________________________________________________________________ 
 2cze(A) : MIVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL 
         :                                                                                                                          
 2czd(B) : MIVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL 
           _________________________27_____________42_____49_______________________________________________________________________ 

           __________________________________157___________________________________________________                                 
 2cze(A) : TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIRGV                                 
         :                                                                                                                          
 2czd(B) : TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIRG*                                 
           __________________________________157___________________________________________________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.8
Translation
(A) 		-0.1
Closure
(%) 		75.0
Bending Residues
( green ) 		  27 - 28
  42 - 44
  49 - 55
  157 - 177
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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