Para-Nitrobenzyl Esterase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Para-Nitrobenzyl Esterase
  Conformer 1
(PDB)
1c7j (A)
  Conformer 2
(PDB)
1qe3 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 428 0.79   5 - 310   330 - 352   359 - 388   397 - 481
2 33 0.78   311 - 329   353 - 358   389 - 396

Sequence


           ________________________________________________________________________________________________________________________ 
 1c7j(A) : THQIVTTQYGKVKGTTENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAYGPVCPQPSDLLSLSYTELPRQSEDCLYVNVFAPDTPSQNLPVMVWIHGGAFYLGAGSEPLYDGS 
         :                                                                                                                          
 1qe3(A) : THQIVTTQYGKVKGTTENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAYGPICPQPS---------lPRQSEDCLYVNVFAPDTPSQNLPVMVWIHGGAFYLGAGSEPLYDGS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1c7j(A) : KLAAQGEVIVVTLNYRLGPFGFMHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAAFLQVLGINE 
         :                                                                                                                          
 1qe3(A) : KLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAAFLQVLGINE 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________310________________329____________________352___358___ 
 1c7j(A) : SQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEGYLFFTSDSDVRSQETLDAALEYSLGKPLAEKAADLYPRSLESQIHMVTDL 
         :                                                                                                                          
 1qe3(A) : SQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEGYLFFTPDSDVHSQETLDAALEYLLGKPLAEKAADLYPRSLESQIHMMTDL 
           __________________________________________________________________310________________329____________________352___358___ 

           ________________________388_____396_____________________________________________________________________________________ 
 1c7j(A) : LFWRPAVAFASAQSHYAPVWMYRFDWHPEKPPYNKAFHALELPFVFGNLDGLERMAKAEITDEVKQLSHTIQSAWITFAKTGNPSTEAVNWPAYHEETRETVILDSEITIENDPESEKRQ 
         :                                                                                                                          
 1qe3(A) : LFWRPAVAYASAQSHYAPVWMYRFDWHPEKPPYNKAFHALELPFVFGNLDGL-------iTDEVKQLSHTIQSAWITFAKTGNPSTEAVNWPAYHEETRETVILDSEITIENDPESEKRQ 
           ________________________388_____396_____________________________________________________________________________________ 

           _____                                                                                                                    
 1c7j(A) : KLFPS                                                                                                                    
         :                                                                                                                          
 1qe3(A) : KLF**                                                                                                                    
           _____                                                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.3
Translation
(A)
0.0
Closure
(%)
23.4
Bending Residues
( green )
  310 - 311
  329 - 332
  352 - 353
  358 - 359
  388 - 389
  396 - 397
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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