Pc287 Immunoglobulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pc287 Immunoglobulin
  Conformer 1
(PDB)
1kcu (L)
  Conformer 2
(PDB)
1igy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 110 1.11   81 - 83   106 - 212
2 99 0.73   4 - 80   84 - 105

Sequence


           _____________________________________________________________________________79_______________________105_______________ 
 1kcu(L) : DIVLTQSPKSMSMSVGEKVTLSCKASENVDTYVSWYQQRPEQPPALLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQAEDLADYHCGQSYSYPLTFGGGTKLELKRADAAPTVSIFPP 
         :                                                                                                                          
 1igy(A) : *KCAHTVSKSMSMSVGERVTLTCKASENVVTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQAEDLADYHCGQGYSYPYTFGGGTKLEIKRADAAPTVSIFPP 
           _____________________________________________________________________________79_______________________105_______________ 

           ______________________________________________________________________________________________                           
 1kcu(L) : SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVANSWTAQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPVVKSFNRNEC                           
         :                                                                                                                          
 1igy(A) : SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                           
           ______________________________________________________________________________________________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.7
Translation
(A)
-1.0
Closure
(%)
66.7
Bending Residues
( green )
  79 - 84
  105 - 106
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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