Pectate Lyase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pectate Lyase
  Conformer 1
(PDB) 		1gxm (A)
  Conformer 2
(PDB) 		1gxo (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 187 0.32   332 - 334   426 - 434   440 - 440   442 - 457   488 - 645
2 127 0.64   335 - 425   435 - 439   441 - 441   458 - 487

Sequence


           ______334________________________________________________________________________________________425______434__439______ 
 1gxm(A) : MTGRMLTLDGNPAANWLNNARTKWSASRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSD 
         :                                                                                                                          
 1gxo(A) : ***RMLTLDGNPAANWLNNARTKWSASRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIANGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSD 
           ______334________________________________________________________________________________________425______434__439______ 

           _________457___________________________487______________________________________________________________________________ 
 1gxm(A) : HATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNS 
         :                                                                                                                          
 1gxo(A) : HATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNS 
           _________457___________________________487______________________________________________________________________________ 

           ____________________________________________________________________________________                                     
 1gxm(A) : PRTYLEGYTYDSSLAATNPIVPRAGSKMWYRFYDLNTNRGFFSDRDGSKFYDITQMSLERRTGYSWGGNYGTSIINFAQKVGYL                                     
         :                                                                                                                          
 1gxo(A) : PRTYLEGYTYDSSLAATNPIVPRAGSKMWYRFYDLNTNRGFFSDRDGSKFYDITQMSLERRTGYSWGGNYGTSIINFAQKVGY*                                     
           ____________________________________________________________________________________                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.1
Translation
(A) 		0.0
Closure
(%) 		99.5
Bending Residues
( green ) 		  334 - 335
  425 - 426
  434 - 435
  439 - 442
  457 - 458
  487 - 488
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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