Penicillin Amidase Alpha Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Penicillin Amidase Alpha Subunit
  Conformer 1
(PDB)
1e3a (A)
  Conformer 2
(PDB)
1kec (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 134 0.22   7 - 140
2 28 0.28   152 - 179

Sequence


           ________________________________________________________________________________________________________________________ 
 1e3a(A) : SSSEIKIVRDEYGMPHIYANDTWHLFYGYGYVVAQDRLFQMEMARRSTQGTVAEVLGKDFVKFDKDIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTF 
         :                                                                                                                          
 1kec(A) : SSSEIKIVRDEYGMPHIYANDTWHLFYGYGYVVAQDRLFQMEMARRSTQGTVAEVLGKDFVKFDKDIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTF 
           ________________________________________________________________________________________________________________________ 

           __________135___________________________________________________________________________________________________________ 
 1e3a(A) : GFTPKRWEPFDVAMIFVGTMANRFSDSTSEIDNLALLTALKDKYGVSQGMAVFNQLKWLVNPSAPTTIAVQESNYPLKFNQQNSQTAALLPRYDLPAPMLDRPAKGADGALLALAAGKNR 
         :                                                                                                                          
 1kec(A) : GFTPKRWEPFDVAMIFVGTMANRYSDSTSEIDNLALLTALKDKYGVSQGMAVFNQLKWLVNPSAPTTIAVQESNYPLKFNQQNSQT********************************** 
           __________135___________________________________________________________________________________________________________ 

           __________________                                                                                                       
 1e3a(A) : ETIAAQFAQGGANGLAGY                                                                                                       
         :                                                                                                                          
 1kec(A) : ******************                                                                                                       
           __________________                                                                                                       

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.6
Translation
(A)
-0.1
Closure
(%)
79.6
Bending Residues
( green )
  135 - 152
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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