Penicillinase Repressor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Penicillinase Repressor
  Conformer 1
(PDB)
1sd4 (B)
  Conformer 2
(PDB)
1xsd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 70 0.69   7 - 78
2 44 0.77   79 - 124

Sequence


           ___________________________________________________________________________78___________________________________________ 
 1sd4(B) : ***QVEIS-aEWDV-nIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIK-kTAKTFLNKLYGGD-kSLVLNFAKNEELNNKEIEELRDILN 
         :                                                                                                                          
 1xsd(A) : TNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILN 
           ___________________________________________________________________________78___________________________________________ 

           _____                                                                                                                    
 1sd4(B) : DISKK                                                                                                                    
         :                                                                                                                          
 1xsd(A) : DISKK                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
25.5
Translation
(A)
-0.7
Closure
(%)
96.4
Bending Residues
( green )
  78 - 79
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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