Peroxisomal Targeting Signal 1 Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peroxisomal Targeting Signal 1 Receptor
  Conformer 1
(PDB) 		2c0m (A)
  Conformer 2
(PDB) 		2c0l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 166 1.4   300 - 460   463 - 486   497 - 499
2 113 1.47   461 - 462   487 - 496   500 - 600

Sequence


           ________________________________________________________________________________________________________________________ 
 2c0m(A) : DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 
         :                                                                                                                          
 2c0l(A) : **************HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 
           ________________________________________________________________________________________________________________________ 

           _______________________________________458_________________________486_______496________________________________________ 
 2c0m(A) : TP---------dSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 
         :                                                                                                                          
 2c0l(A) : pSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 
           _______________________________________495_________________________523_______533________________________________________ 

           __________________________________________________________________                                                       
 2c0m(A) : EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ                                                       
         :                                                                                                                          
 2c0l(A) : EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ                                                       
           __________________________________________________________________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.7
Translation
(A) 		-0.7
Closure
(%) 		95.0
Bending Residues
( green ) 		  458 - 463
  486 - 487
  496 - 500
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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