Peroxisomal Multifunctional Enzyme Type 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peroxisomal Multifunctional Enzyme Type 2
  Conformer 1
(PDB) 		1s9c (K)
  Conformer 2
(PDB) 		1s9c (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 216 0.51   17 - 67   88 - 113   126 - 142   164 - 287
2 22 0.81   86 - 87   114 - 125   143 - 163

Sequence


           ________________________________________________________66_____________________________________113_________125__________ 
 1s9c(K) : **IGQKLPPFSYAYTELEAIMYALGVGASIKDPKDLKFIYEGSSDFSCLPTFGVIIGQKS---------aKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGVVIIMDVYSYSe-- 
         :                                                                                                                          
 1s9c(D) : GAIGQKLPPFSYAYTELEAIMYALGVGASIKDPKDLKFIYEGSSDFSCLPTFGVIIGQKSMMlAEIPnFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVL-----vVIIMDVYSYSEKE 
           ________________________________________________________66_____________________________________113_________125__________ 

           ____142_____________163_________________________________________________________________________________________________ 
 1s9c(K) : LICHNQFSLFLVGSkRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEM 
         :                                                                                                                          
 1s9c(D) : LICHNQFSLFL---kRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEM 
           ____142_____________163_________________________________________________________________________________________________ 

           _____________________________                                                                                            
 1s9c(K) : WKEGNRIHFQTKVQETGDIVISNAYVDLA                                                                                            
         :                                                                                                                          
 1s9c(D) : WKEGNRIHFQTKVQETGDIVISNAYVDLA                                                                                            
           _____________________________                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.1
Translation
(A) 		-0.2
Closure
(%) 		80.5
Bending Residues
( green ) 		  66 - 91
  113 - 114
  125 - 126
  142 - 143
  163 - 164
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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