Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Kinase
  Conformer 1
(PDB)
1kf0 (A)
  Conformer 2
(PDB)
1vjc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 254 0.65   124 - 143   163 - 176   188 - 407
2 157 0.52   4 - 123   144 - 162   177 - 187   408 - 414

Sequence


           ________________________________________________________________________________________________________________________ 
 1kf0(A) : SLSNKLTLDKLNVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAVELKSLLGKDVLFLKDCVGPEVEKACADPAAGSVILLEN 
         :                                                                                                                          
 1vjc(A) : SLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAIPSIKFCLDNGAKSVVLMSHLGRPDGIPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACADPAAGSVILLEN 
           ________________________________________________________________________________________________________________________ 

           123_________________143________________162___________176________187_____________________________________________________ 
 1kf0(A) : LRFHVEEEGKGKDASGNKVKAEPAKIKTFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPKKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMA 
         :                                                                                                                          
 1vjc(A) : LRFHVEEEGKGKDASGSKVKADPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPKKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMA 
           123_________________143________________162___________176________187_____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kf0(A) : FTFLKVLNNMEIGTSLFDEEGAKIVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKTGQATVASGIPAGWMGLDCGPESSKKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVK 
         :                                                                                                                          
 1vjc(A) : FTFLKVLNNMEIGTSLFDEEGSKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVK 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________407_________                                                                 
 1kf0(A) : ATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNV                                                                 
         :                                                                                                                          
 1vjc(A) : ATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNV                                                                 
           ____________________________________________407_________                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.8
Translation
(A)
-0.6
Closure
(%)
70.1
Bending Residues
( green )
  123 - 124
  143 - 144
  162 - 166
  176 - 177
  187 - 188
  407 - 414
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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