Phosphoenolypyruvate Carboxykinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoenolypyruvate Carboxykinase
  Conformer 1
(PDB)
2fah (A)
  Conformer 2
(PDB)
2faf (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 361 0.7   36 - 122   130 - 273   277 - 285   327 - 332   346 - 435   477 - 479   500 - 511   516 - 522   615 - 615   618 - 619
2 227 1.17   123 - 129   274 - 276   286 - 326   333 - 345   436 - 476   480 - 499   512 - 515   523 - 614   616 - 617   620 - 635

Sequence


           ______________________________________________________________________________________122____129________________________ 
 2fah(A) : LSTSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGC 
         :                                                                                                                          
 2faf(B) : LSTSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGC 
           ______________________________________________________________________________________122____129________________________ 

           _____________________________________________________________________________________________________________________273 
 2fah(A) : MAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVGPAVLQRLDDDFVRCLHSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASRM 
         :                                                                                                                          
 2faf(B) : MAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVGPAVLQRLDDDFVRCLHSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASRM 
           _____________________________________________________________________________________________________________________273 

           _________285______________________________________326___332__________345________________________________________________ 
 2fah(A) : AQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMKFDDEGRLRAINPERGFFGVAPGTSSRTNPNAMATIARNTIFTNVGLRSDGGVYWDGLD 
         :                                                                                                                          
 2faf(B) : AQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMKFDDEGRLRAINPERGFFGVAPGTSSRTNPNAMATIARNTIFTNVGLRSDGGVYWDGLD 
           _________285______________________________________326___332__________345________________________________________________ 

           _______________________________________435______________________________________476____________________499_________511_5 
 2fah(A) : EPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQCPIMDPRWDDPEGVPIDAIIFGGRRPRGVPLVVEAFGWRHGVFMGSAMRSEATAAAEHKGGRLMHDPFAMRPFFGYNAGRYL 
         :                                                                                                                          
 2faf(B) : EPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQCPIMDPRWDDPEGVPIDAIIFGGRRPRGVPLVVEAFGWRHGVFMGSAMRS------------lMHDPFAMRPFFGYNAGRYL 
           _______________________________________435______________________________________476____________________499_________511_5 

           15____522_________________________________________________________________________________________614___________________ 
 2fah(A) : EHWLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWIFGRIQGRDTARPTPIGWVPKEGDLDLGGLPGVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRDVMAELEG 
         :                                                                                                                          
 2faf(B) : EHWLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWIFGRIQGRDTARPTPIGWVPKEGDLDLGGLPGVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRDVMAELEG 
           15____522_________________________________________________________________________________________614___________________ 

           ________                                                                                                                 
 2fah(A) : LEERVRKM                                                                                                                 
         :                                                                                                                          
 2faf(B) : LEERVRKM                                                                                                                 
           ________                                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.5
Translation
(A)
0.4
Closure
(%)
99.0
Bending Residues
( green )
  122 - 123
  129 - 132
  273 - 274
  276 - 277
  285 - 286
  326 - 327
  332 - 333
  345 - 346
  435 - 436
  476 - 477
  479 - 480
  499 - 500
  511 - 512
  515 - 516
  522 - 523
  614 - 620
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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