Phosphopantothenoylcysteine Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphopantothenoylcysteine Synthetase
  Conformer 1
(PDB)
1p9o (B)
  Conformer 2
(PDB)
1p9o (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 237 2.13   22 - 229   250 - 303
2 20 0.68   230 - 249

Sequence


           ________________________________________________________________________________________________________________________ 
 1p9o(B) : VAEFPQPPGAARWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPsG----LLSLEAEENALPG 
         :                                                                                                                          
 1p9o(A) : ***********RWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPlSGLLSLEAEENALPG 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________228__________________249_________ 
 1p9o(B) : FAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMlQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVAN 
         :                                                                                                                          
 1p9o(A) : FAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPp---LQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVAN 
           _______________________________________________________________________________________228__________________249_________ 

           ____________________________________________                                                                             
 1p9o(B) : IsFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI                                                                             
         :                                                                                                                          
 1p9o(A) : I-fVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI                                                                             
           ____________________________________________                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.5
Translation
(A)
-2.2
Closure
(%)
99.0
Bending Residues
( green )
  228 - 231
  249 - 250
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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