Phosphoribosylaminoimidazole-Succinocarboxamide Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
  Conformer 1
(PDB)
2cnq (A)
  Conformer 2
(PDB)
1obg (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 149 0.96   67 - 74   109 - 235   240 - 256
2 146 1.18   5 - 66   75 - 108   236 - 239   257 - 302

Sequence


           _______________________________________________________________66______74_______________________________108_____________ 
 2cnq(A) : SITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIV 
         :                                                                                                                          
 1obg(A) : SITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIV 
           _______________________________________________________________66______74_______________________________108_____________ 

           _______________________________________________________________________________________________________________235_239__ 
 2cnq(A) : RGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAe---HDENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSS 
         :                                                                                                                          
 1obg(A) : RGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSS 
           _______________________________________________________________________________________________________________235_239__ 

           _________253_____________________________________________________                                                        
 2cnq(A) : RFWNGASYKVGESQDSYDKQFLRDWLTANKLNGVNGVKMPQDIVDRTRAKYIEAYETLTGSKWS*                                                        
         :                                                                                                                          
 1obg(A) : RFWNGASYKVGESQDSYDKQFLRDWLTANKLNGVNGVKMPQDIVDRTRAKYIEAYETLTGSKWSH                                                        
           _________253_____________________________________________________                                                        

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.3
Translation
(A)
-0.6
Closure
(%)
47.5
Bending Residues
( green )
  66 - 67
  74 - 75
  108 - 109
  235 - 236
  239 - 240
  253 - 270
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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