P-Hydroxybenzoate Hydroxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name P-Hydroxybenzoate Hydroxylase
  Conformer 1
(PDB)
1k0i (A)
  Conformer 2
(PDB)
1ykj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 209 0.59   3 - 43   46 - 68   70 - 70   98 - 177   272 - 290   298 - 298   300 - 336   386 - 392
2 181 0.55   44 - 45   69 - 69   71 - 97   178 - 271   291 - 297   299 - 299   337 - 385

Sequence


           _________________________________________43_______________________68___________________________97_______________________ 
 1k0i(A) : MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT 
         :                                                                                                                          
 1ykj(A) : MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRGGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT 
           _______________________________________1043_____________________1068_________________________1097_______________________ 

           ______________________________________________________177_______________________________________________________________ 
 1k0i(A) : VYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSQYYVQVPLSEKVEDWSDERFW 
         :                                                                                                                          
 1ykj(A) : VYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYYVQVPLSEKVEDWSDERFW 
           _____________________________________________________1177_______________________________________________________________ 

           ____________________________271________________290____297____________________________________336________________________ 
 1k0i(A) : TELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFS 
         :                                                                                                                          
 1ykj(A) : TELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFS 
           ___________________________1271_______________1290___1297___________________________________1336________________________ 

           ______________________385_________                                                                                       
 1k0i(A) : QRIQQTELEYYLGSEAGLATIAENYVGLPYEEIE                                                                                       
         :                                                                                                                          
 1ykj(A) : QRIQQTELEYYLGSEAGLATIAENYVGLPYEEIE                                                                                       
           _____________________1385_________                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.0
Translation
(A)
0.4
Closure
(%)
100.0
Bending Residues
( green )
  43 - 48
  68 - 71
  97 - 98
  177 - 178
  271 - 272
  290 - 291
  297 - 301
  336 - 339
  385 - 386
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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