Plasmid Partition Par B Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Plasmid Partition Par B Protein
  Conformer 1
(PDB)
1zx4 (A)
  Conformer 2
(PDB)
2ntz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 113 0.99   149 - 269
2 50 1.47   270 - 324

Sequence


           ______________________________________________________________________________________________________________________26 
 1zx4(A) : **ALQHSIREIGLRLrkNDGsQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEgNKNLEFDQLIQNISPEINDILSIe-aEDEVKNKILRLITKEASLLT 
         :                                                                                                                          
 2ntz(A) : QTALQHSIREIGLRLrkNDGsQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEgN--lEFDQLIQNISPEINDILSIEEaEDEVKNKILRLITKEASLLT 
           ______________________________________________________________________________________________________________________26 

           9______________________________________________________________                                                          
 1zx4(A) : DKGSKDKSVVTELWKFEDKDRFARKRVKGRAFSYEFNRLSKELQEELDRiGHILRKS******                                                          
         :                                                                                                                          
 2ntz(A) : DK----kSVVTELWKFEDKDRFARKRVKGRAFSYEFNRLSKELQEELDRiGHILRKSLDKKPK                                                          
           9______________________________________________________________                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
114.1
Translation
(A)
0.6
Closure
(%)
29.9
Bending Residues
( green )
  269 - 275
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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