Plasmid Partition Par B Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Plasmid Partition Par B Protein
  Conformer 1
(PDB) 		1zx4 (A)
  Conformer 2
(PDB) 		2ntz (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 114 1.28   152 - 276
2 47 0.66   277 - 324

Sequence


           ______________________________________________________________________________________________________________________27 
 1zx4(A) : ALQHSIREIGLRLrkNDGsQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEgNKNLEFDQLIQNISPEINDILSIe-aEDEVKNKILRLITKEASLLTDK 
         :                                                                                                                          
 2ntz(B) : ****SIREIGLRLrkNDGsQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEgNKNLEFDQLIQNISPEINDILSIEEaEDEVKNKILRLITKEASLLTDk 
           ______________________________________________________________________________________________________________________27 

           6______________________________________________________                                                                  
 1zx4(A) : GSKDKSVVTELWKFEDKDRFARKRVKGRAFSYEFNRLSKELQEELDRiGHILRKS                                                                  
         :                                                                                                                          
 2ntz(B) : -----SVVTELWKFEDKDRFARKRVKGRAFSYEFNRLSKELQEELDRiGHILRKS                                                                  
           6______________________________________________________                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		43.1
Translation
(A) 		-1.6
Closure
(%) 		99.9
Bending Residues
( green ) 		  276 - 278
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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