Poly(a)-Specific Ribonuclease Parn

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Poly(a)-Specific Ribonuclease Parn
  Conformer 1
(PDB)
2a1s (C)
  Conformer 2
(PDB)
2a1s (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 285 0.84   3 - 138   262 - 425
2 98 1.01   139 - 261

Sequence


           ________________________________________________________________________________________________________________________ 
 2a1s(C) : MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISD---fDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVF 
         :                                                                                                                          
 2a1s(B) : MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSfDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVF 
           ________________________________________________________________________________________________________________________ 

           ________138_________________________________________________________________________________________________260_________ 
 2a1s(C) : RNGIPYLNQEEERQLREQYDpVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVG 
         :                                                                                                                          
 2a1s(B) : RNGIPYLNQEEERQLREQYD---iPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVG 
           ________138_________________________________________________________________________________________________260_________ 

           ________________________________________________________________________________________________________________________ 
 2a1s(C) : FSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYqLHEAGYDAYITGLCFISMA 
         :                                                                                                                          
 2a1s(B) : FSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYqLHEAGYDAYITGLCFISMA 
           ________________________________________________________________________________________________________________________ 

           ____________________________________                                                                                     
 2a1s(C) : NYLGSFLSPPKIHVSARSKLIEPFFNKLFLMRVMDI                                                                                     
         :                                                                                                                          
 2a1s(B) : NYLGSFLSPPKIHVSARSKLIEPFFNKLFLMRV***                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.2
Translation
(A)
0.2
Closure
(%)
69.2
Bending Residues
( green )
  138 - 139
  260 - 263
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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