Poly(a) Polymerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Poly(a) Polymerase
  Conformer 1
(PDB)
2hhp (A)
  Conformer 2
(PDB)
1fa0 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 470 1.88   9 - 424   461 - 518
2 20 7.75   425 - 460

Sequence


           ________________________________________________________________________________________________________________________ 
 2hhp(A) : *QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDS 
         :                                                                                                                          
 1fa0(A) : SQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hhp(A) : LLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 
         :                                                                                                                          
 1fa0(A) : LLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hhp(A) : ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYL 
         :                                                                                                                          
 1fa0(A) : ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________422________________________460_________________________________ 
 2hhp(A) : EITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCPTEDDYEMIQDKY----GSHKTETALNALKpKAYLSTMYIGLDFN----kEKVDIHIPCTEFVNLCR 
         :                                                                                                                          
 1fa0(A) : EITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCPTEDDYEMIQDKlKLVTDENKEEESIKD-APKAYLSTMYIGLDFNIENKKEKVDIHIPCTEFVNLCR 
           _________________________________________________________422________________________460_________________________________ 

           _____________________________________                                                                                    
 2hhp(A) : SFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS                                                                                    
         :                                                                                                                          
 1fa0(A) : SFNEDYGDHKVFNLALRFVKGYDLPDEVFD*******                                                                                    
           _____________________________________                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
79.6
Translation
(A)
-1.8
Closure
(%)
6.8
Bending Residues
( green )
  422 - 426
  460 - 465
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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