Prephenate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Prephenate Dehydrogenase
  Conformer 1
(PDB) 		2f1k (C)
  Conformer 2
(PDB) 		2f1k (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 158 0.49   3 - 94   97 - 164
2 114 0.43   95 - 96   165 - 276

Sequence


           ____________________________________________________________________________________________94__________________________ 
 2f1k(C) : MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPaGTAAQG 
         :                                                                                                                          
 2f1k(D) : MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPaGTAAQG 
           ____________________________________________________________________________________________94__________________________ 

           _______________________________________164______________________________________________________________________________ 
 2f1k(C) : IDGAEENLFVNAPYVLTPTEYTDPEQLAlRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVGGGNPELGTMMATYNQRALLKSLQ 
         :                                                                                                                          
 2f1k(D) : IDGAEENLFVNAPYVLTPTEYTDPEQLAlRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVGGGNPELGTMMATYNQRALLKSLQ 
           _______________________________________164______________________________________________________________________________ 

           _____________________________________                                                                                    
 2f1k(C) : DYRQHLDQLITLISNQQWPELHRLLQQTNGDRDKYV*                                                                                    
         :                                                                                                                          
 2f1k(D) : DYRQHLDQLITLISNQQWPELHRLLQQTNGDRDKYVE                                                                                    
           _____________________________________                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.5
Translation
(A) 		-0.1
Closure
(%) 		99.7
Bending Residues
( green ) 		  94 - 97
  164 - 169
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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