Probable Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Transcriptional Regulator
  Conformer 1
(PDB) 		2hr3 (A)
  Conformer 2
(PDB) 		2hr3 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 70 0.82   29 - 105
2 62 0.57   4 - 28   106 - 143

Sequence


           ______________________25________________________________________________________________________105_____________________ 
 2hr3(A) : PTNQDLQLAAHLRSQVTTLTRRLRREAQADPVQFSQLVVLGAIDRLGGDVTPSELAAAERrSSNLAALLRELERGGLIVRHA--rTRVSLSSEGRRNLYGNRAKREEWLVRAhACLDESE 
         :                                                                                                                          
 2hr3(D) : PTNQDLQLAAHLRSQVTTLTRRLRREAQADPVQFSQLVVLGAIDRLGGDVTPSELAAAERrSSNLAALLRELERGGLIVRHADPrTRVSLSSEGRRNLYGNRAKREEWLVRAhACLDESE 
           ______________________25________________________________________________________________________105_____________________ 

           ___________________                                                                                                      
 2hr3(A) : RALLAAAGPLLTRLAQFEE                                                                                                      
         :                                                                                                                          
 2hr3(D) : RALLAAAGPLLTRLAQFE*                                                                                                      
           ___________________                                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.2
Translation
(A) 		-1.0
Closure
(%) 		43.6
Bending Residues
( green ) 		  25 - 36
  105 - 107
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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