Probable Regulatory Protein Embr

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Regulatory Protein Embr
  Conformer 1
(PDB)
2ff4 (B)
  Conformer 2
(PDB)
2ff4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 255 0.5   10 - 58   66 - 70   75 - 156   158 - 275   336 - 336
2 113 0.51   59 - 65   71 - 74   157 - 157   276 - 335   337 - 377

Sequence


           _________________________________________________58_____65___70__74_____________________________________________________ 
 2ff4(B) : EKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAA 
         :                                                                                                                          
 2ff4(A) : EKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAA 
           _________________________________________________58_____65___70__74_____________________________________________________ 

           __________________________156___________________________________________________________________________________________ 
 2ff4(B) : AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 
         :                                                                                                                          
 2ff4(A) : AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 
           __________________________156___________________________________________________________________________________________ 

           _____________________271_____________________________________________________________335________________________________ 
 2ff4(B) : RALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGD 
         :                                                                                                                          
 2ff4(A) : RALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGD 
           _____________________271_____________________________________________________________335________________________________ 

           ___________________                                                                                                      
 2ff4(B) : HIRICDHEFTFQI******                                                                                                      
         :                                                                                                                          
 2ff4(A) : HIRICDHEFTFQISAGTHG                                                                                                      
           ___________________                                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.3
Translation
(A)
-0.3
Closure
(%)
95.7
Bending Residues
( green )
  58 - 59
  65 - 66
  70 - 71
  74 - 75
  156 - 158
  271 - 276
  335 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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