Programmed Cell Death 6-Interacting Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Programmed Cell Death 6-Interacting Protein
  Conformer 1
(PDB) 		2oex (B)
  Conformer 2
(PDB) 		2oex (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 286 1.35   380 - 576   608 - 699
2 28 0.68   365 - 379   595 - 607

Sequence


           ________________379_____________________________________________________________________________________________________ 
 2oex(B) : *SVQQSLAAYNQRKADLVNRSIAQrEATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS 
         :                                                                                                                          
 2oex(A) : VSVQQSLAAYNQRKADLVNRSIAQrEATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS 
           ________________379_____________________________________________________________________________________________________ 

           ___________________________________________________________________________________________576__________________________ 
 2oex(B) : NELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTqGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDtSKFLTALAQDGVINEEALSVTE 
         :                                                                                                                          
 2oex(A) : NELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTqGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDtSKFLTALAQDGVINEEALSVTE 
           ___________________________________________________________________________________________576__________________________ 

           _607______________________________________________________________________________________________                       
 2oex(B) : LDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKkQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTER                       
         :                                                                                                                          
 2oex(A) : LDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKkQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTER                       
           _607______________________________________________________________________________________________                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.3
Translation
(A) 		-1.5
Closure
(%) 		45.4
Bending Residues
( green ) 		  379 - 380
  576 - 598
  607 - 608
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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