Protein Ybgc

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein Ybgc
  Conformer 1
(PDB)
1s5u (E)
  Conformer 2
(PDB)
1s5u (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 90 0.46   8 - 53   59 - 84   93 - 110
2 34 0.6   54 - 58   85 - 92   111 - 131

Sequence


           ___________________________________________________51_____58______________________82________92_______________110________ 
 1s5u(E) : GHMNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLK 
         :                                                                                                                          
 1s5u(C) : *****TLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLK 
           ___________________________________________________51_____58______________________82________92_______________110________ 

           ________________                                                                                                         
 1s5u(E) : MKPRALPKSIVAEFKQ                                                                                                         
         :                                                                                                                          
 1s5u(C) : MKPRALPKSIVAEFK*                                                                                                         
           ________________                                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.4
Translation
(A)
0.3
Closure
(%)
97.5
Bending Residues
( green )
  51 - 54
  58 - 60
  82 - 85
  92 - 93
  110 - 111
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download