Protein Ec1268, Rpia

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein Ec1268, Rpia
  Conformer 1
(PDB) 		1ks2 (A)
  Conformer 2
(PDB) 		1ks2 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 138 0.49   70 - 208   210 - 212   217 - 217
2 69 0.45   5 - 69   209 - 209   213 - 216

Sequence


           _________________________________________________________________69_____________________________________________________ 
 1ks2(A) : TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTkGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHqiKGGGAALTREKIIASVAEKFICIADASKQVD 
         :                                                                                                                          
 1ks2(B) : TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTkGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHqiKGGGAALTREKIIASVAEKFICIADASKQVD 
           _________________________________________________________________69_____________________________________________________ 

           ______________________________________________________________________________208_____216___                             
 1ks2(A) : ILGKFPLPVEVIPaRSAVARQLVKLGGRPEYRQGVVTDNGNVILDVHGeILDPIAeNAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK                             
         :                                                                                                                          
 1ks2(B) : ILGKFPLPVEVIPaRSAVARQLVKLGGRPEYRQGVVTDNGNVILDVHGeILDPIAeNAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK                             
           ______________________________________________________________________________208_____216___                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.1
Translation
(A) 		-0.5
Closure
(%) 		98.4
Bending Residues
( green ) 		  69 - 70
  208 - 213
  216 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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