Protein Rdmb

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein Rdmb
  Conformer 1
(PDB) 		1xds (A)
  Conformer 2
(PDB) 		1qzz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 168 2.54   12 - 160   288 - 313   340 - 346
2 151 1.2   161 - 287   314 - 339   347 - 355

Sequence


           ________________________________________________________________________________________________________________________ 
 1xds(A) : LEPTDQDLDVLLKNLGNLVTP-aLRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE--rPLRPTRLG-lLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVV 
         :                                                                                                                          
 1qzz(A) : LEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKgRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVV 
           ________________________________________________________________________________________________________________________ 

           ___________________________160__________________________________________________________________________________________ 
 1xds(A) : RTGRPAYAGRYGRPFWEDLSADVALADSFDAL-sCD---------dAYDWSAVRHVLDVGGGNGG-lAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTAD 
         :                                                                                                                          
 1qzz(A) : RTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTAD 
           ___________________________160__________________________________________________________________________________________ 

           __________________________________287______________________313______________________337____________________              
 1xds(A) : VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLR-lTF-gGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS              
         :                                                                                                                          
 1qzz(A) : VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRaD-------RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS              
           __________________________________287______________________313______________________337____________________              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.8
Translation
(A) 		-1.1
Closure
(%) 		98.5
Bending Residues
( green ) 		  160 - 178
  287 - 299
  313 - 314
  337 - 347
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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