Protease Do

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protease Do
  Conformer 1
(PDB) 		1ky9 (B)
  Conformer 2
(PDB) 		1ky9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 208 0.97   14 - 262   264 - 265
2 84 1.52   263 - 263   266 - 351

Sequence


           ________________________________________________________________________________________________________________________ 
 1ky9(B) : QpSLAPlEKVpSVVSINVEGSTTVNTPRpRNFQQFFGgQQQKFaLGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKvGKDPRSDIALIQIQNPKNLTAIKaDSDALRVGDYT 
         :                                                                                                                          
 1ky9(A) : QpSLAPlEKVpSVVSINVEGSTTVNTPRpRNFQQFFGgQQQKFaLGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKvGKDPRSDIALIQIQNPKNLTAIKaDSDALRVGDYT 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________261______________________________ 
 1ky9(B) : VAIGNPFGLGETVTSGIVSALGR---eNFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNvKNLTSQvEYGQVKRGELGIgTELNSELAKAkVDAQRGAFVSQV 
         :                                                                                                                          
 1ky9(A) : VAIGNPFGLGETVTSGIVSALGRSGyENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNvKNLTSQvEYGQVKRGELGIgTELNSELAKAkVDAQRGAFVSQV 
           _______________________________________________________________________________________261______________________________ 

           ________________________________________________________________________________________________________________________ 
 1ky9(B) : LPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTpVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNesNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAE 
         :                                                                                                                          
 1ky9(A) : LPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTpVGSKLTLGLLRDGKQVNVNLE************************************************************* 
           ________________________________________________________________________________________________________________________ 

           __________________________                                                                                               
 1ky9(B) : LRKVLDSKPSVLALNIQRGDSTIYLL                                                                                               
         :                                                                                                                          
 1ky9(A) : **************************                                                                                               
           __________________________                                                                                               

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		100.3
Translation
(A) 		1.2
Closure
(%) 		70.0
Bending Residues
( green ) 		  261 - 266
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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