Proteinase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Proteinase A
  Conformer 1
(PDB) 		1dpj (A)
  Conformer 2
(PDB) 		1fmu (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 278 1.18   2 - 229   257 - 269   286 - 324
2 40 0.66   230 - 256   270 - 285

Sequence


           ________________________________________________________________________________________________________________________ 
 1dpj(A) : GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDG 
         :                                                                                                                          
 1fmu(A) : GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________229________ 
 1dpj(A) : ILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGA 
         :                                                                                                                          
 1fmu(A) : ILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKD----gEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGA 
           _____________________________________________________________________________________________________________231________ 

           ________________256__________269_____________285_________________________________________                                
 1dpj(A) : KKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI                                
         :                                                                                                                          
 1fmu(A) : KKG---qYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI                                
           ________________258__________271_____________287_________________________________________                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.2
Translation
(A) 		-0.3
Closure
(%) 		4.5
Bending Residues
( green ) 		  229 - 230
  256 - 257
  269 - 270
  285 - 286
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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