Protease Synthase And Sporulation Negative Regulatory Protein Pai 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protease Synthase And Sporulation Negative Regulatory Protein Pai 1
  Conformer 1
(PDB)
1tiq (A)
  Conformer 2
(PDB)
1tiq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 85 0.92   4 - 63   66 - 72   74 - 82   94 - 101   112 - 122   158 - 158
2 69 0.54   64 - 65   73 - 73   83 - 93   102 - 111   123 - 156   159 - 172

Sequence


           _________________________________________________________63_______72________82________93_____101_______111________122___ 
 1tiq(A) : SVKkKCSREDLQTLQQLSIETFNDTFKEQNSPENkAYLESAFNTEQLEKELSNsSQFFFIYFDHEIAGYVKVNIDDAQSEEgAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKK 
         :                                                                                                                          
 1tiq(B) : SVKkKCSREDLQTLQQLSIETFND--------eNkAYLESAFNTEQLEKELSNsSQFFFIYFDHEIAGYVKVNIDDAQSEEgAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKK 
           _________________________________________________________63_______72________82________93_____101_______111________122___ 

           _____________________150_________________________                                                                        
 1tiq(A) : NIWLGVWEKNENAIAFYKKgFVQTGAHSFYgDEEQTDLIaKTLILE***                                                                        
         :                                                                                                                          
 1tiq(B) : NIWLGVWEKNENAIAFYKKgFVQTGAHSFYgDEEQTDLIaKTLILEHHH                                                                        
           _____________________150_________________________                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.9
Translation
(A)
-0.1
Closure
(%)
86.6
Bending Residues
( green )
  63 - 66
  72 - 74
  82 - 83
  93 - 94
  101 - 102
  111 - 112
  122 - 123
  150 - 162
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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