Protein Methyltransferase Hemk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein Methyltransferase Hemk
  Conformer 1
(PDB) 		2b3t (A)
  Conformer 2
(PDB) 		1t43 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 222 1.37   11 - 14   21 - 31   67 - 273
2 48 1.23   4 - 10   15 - 20   32 - 66

Sequence


           ________10__14____20_________31_________________________________66______________________________________________________ 
 2b3t(A) : MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGT 
         :                                                                                                                          
 1t43(A) : *EYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGT 
           ________10__14____20_________31_________________________________66______________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2b3t(A) : GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 
         :                                                                                                                          
 1t43(A) : GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 
           ________________________________________________________________________________________________________________________ 

           ____________________________________                                                                                     
 2b3t(A) : QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY                                                                                     
         :                                                                                                                          
 1t43(A) : QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY*                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.7
Translation
(A) 		-0.2
Closure
(%) 		90.4
Bending Residues
( green ) 		  10 - 11
  14 - 16
  20 - 21
  31 - 32
  66 - 67
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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