Purine Nucleotide Synthesis Repressor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Purine Nucleotide Synthesis Repressor
  Conformer 1
(PDB) 		1jft (A)
  Conformer 2
(PDB) 		1dbq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 144 0.46   160 - 293   321 - 336
2 125 1.83   62 - 159   294 - 320

Sequence


           ________________________________________________________________________________________________________________________ 
 1jft(A) : ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLV 
         :                                                                                                                          
 1dbq(A) : **********************************************************KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLV 
           ________________________________________________________________________________________________________________________ 

           __________________________________158___________________________________________________________________________________ 
 1jft(A) : MCSEYPEPLLAMLEEYRHIPMVVMDAGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPT 
         :                                                                                                                          
 1dbq(A) : MCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP------aGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPT 
           __________________________________158___________________________________________________________________________________ 

           _______________________________________________291__________________________320_____________________                     
 1jft(A) : AVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR                     
         :                                                                                                                          
 1dbq(A) : AVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR                     
           _______________________________________________291__________________________320_____________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.4
Translation
(A) 		-1.1
Closure
(%) 		69.9
Bending Residues
( green ) 		  158 - 161
  291 - 294
  320 - 322
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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