Putative Membrane Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Membrane Antigen
  Conformer 1
(PDB) 		2izp (B)
  Conformer 2
(PDB) 		2ixr (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 214 0.86   2049 - 2104   2138 - 2295
2 20 1.65   2105 - 2137

Sequence


           ___________________________________________________________________2104_____________________________2137________________ 
 2izp(B) : ***DDDLRAAGVDRRVPEQKLGAAIDEFASLRLPDRIDGRFVDGRRANLTVFDDARVAVRGHARAQRNLLERLETELLGGTLDTAGDEGGIQPDPILQGLVDVIGQGKSDIDAYATIVEG 
         :                                                                                                                          
 2ixr(A) : AMTDDDLRAAGVDRRVPEQKLGAAIDEFASLRLPDRIDGRFVDGRRANLTVFDDARVAVRGHARAQRNLLERLETELL-------------qPDPILQGLVDVIGQGKSDIDAYATIVEG 
           ____________________________________________________________________104______________________________137________________ 

           ________________________________________________________________________________________________________________________ 
 2izp(B) : LTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARWRKELGDAVSISDSGVVTINPDKLIKMRDSLPPDGTVWDTARYQAWNTAFSGQKDNIQNDVQ 
         :                                                                                                                          
 2ixr(A) : LTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARWRKELGDAVSISDSGVVTINPDKLIKMRDSLPPDGTVWDTARYQAWNTAFSGQKDNIQNDVQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________                                                                                         
 2izp(B) : TLVEKYSHQNSNFDNLVKVLSGAISTLTDTAK                                                                                         
         :                                                                                                                          
 2ixr(A) : TLVEKYSHQNSNFDNLVKVLSGAISTLTD***                                                                                         
           ________________________________                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.1
Translation
(A) 		0.1
Closure
(%) 		57.4
Bending Residues
( green ) 		  2104 - 2105
  2137 - 2139
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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