Putative Coronavirus Nsp2 (3Cl-Pro)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Coronavirus Nsp2 (3Cl-Pro)
  Conformer 1
(PDB) 		1p9u (B)
  Conformer 2
(PDB) 		1lvo (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 202 0.53   5 - 198   234 - 237   240 - 243
2 93 0.61   3 - 4   199 - 233   238 - 239   244 - 297

Sequence


           ___4____________________________________________________________________________________________________________________ 
 1p9u(B) : SGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGC 
         :                                                                                                                          
 1lvo(E) : SGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGC 
           ___4____________________________________________________________________________________________________________________ 

           ___________________________________________________________________________198________________________________233_______ 
 1p9u(B) : PGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTE 
         :                                                                                                                          
 1lvo(E) : PGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTE 
           ___________________________________________________________________________198________________________________233_______ 

           ____________________________________________________________                                                             
 1p9u(B) : LSSTDAFSMLAAKTGQSVEKLLDSIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVN                                                             
         :                                                                                                                          
 1lvo(E) : LSSTDAFSMLAAKTGQSVEKLLDSIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGV*                                                             
           ____________________________________________________________                                                             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.4
Translation
(A) 		-0.2
Closure
(%) 		98.3
Bending Residues
( green ) 		  4 - 5
  198 - 199
  233 - 244
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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