Putative Prephenate Dehydratase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Prephenate Dehydratase
  Conformer 1
(PDB) 		2iq8 (A)
  Conformer 2
(PDB) 		2iq8 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 149 0.86   4 - 77   168 - 261
2 90 0.69   78 - 167

Sequence


           __________________________________________________________________________77____________________________________________ 
 2iq8(A) : QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 
         :                                                                                                                          
 2iq8(B) : QLYYLGPKGTFSYLACRQYFS---aTFQPKSNLFEVIKAVAd--TSIGVVPIENSI---iNIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 
           __________________________________________________________________________77____________________________________________ 

           ___________________________________________167__________________________________________________________________________ 
 2iq8(A) : YDYVDSTIQSLTKIENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQQFDQNATSLfLITPhDKPGLLASVLNTFALFNINLSWIESRPLKTQLGyRFFVQADSAITTDIK 
         :                                                                                                                          
 2iq8(B) : YDYVDSTIQSLTKIENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQQF--nATSLfLITPhDKPGLLASVLNTFALFNINLSWIESRP-----gyRFFVQADSAITTDIK 
           ___________________________________________167__________________________________________________________________________ 

           ___________________                                                                                                      
 2iq8(A) : KVIAILETLDFKVEiGAFN                                                                                                      
         :                                                                                                                          
 2iq8(B) : KVIAILETLDFKVEiGAFN                                                                                                      
           ___________________                                                                                                      

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.1
Translation
(A) 		-0.4
Closure
(%) 		2.6
Bending Residues
( green ) 		  77 - 78
  167 - 168
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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