DynDom - Protein Domain Motions

Putative Tagatose 6-Phosphate Kinase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Putative Tagatose 6-Phosphate Kinase 1
Conformer 1 (PDB)	2fiq (D)
Conformer 2 (PDB)	2fiq (C)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	208	0.48	4 - 15 21 - 22 42 - 54 58 - 69 73 - 73 83 - 225 235 - 255 262 - 265 268 - 277 412 - 416
2	186	0.48	16 - 20 23 - 41 55 - 57 70 - 72 74 - 82 226 - 234 256 - 261 266 - 267 278 - 411 417 - 417

Sequence

`____________15___20___________________41___________54_57_________69_72________82________________________________________` `2fiq(D) : KTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGtPADFREFVFAIADKVGFARERIILGGDHLGPNCWQQENVDAAeKSVELVKAYVRAGFSKIHL` `:` `2fiq(C) : KTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGtPADFREFVFAIADKVGFARERIILGGDHLGPNCWQQENVDAAeKSVELVKAYVRAGFSKIHL` `____________15___20___________________41___________54_57_________69_72________82________________________________________` `_________________________________________________________________________________________225______234_________________25` `2fiq(D) : DASsCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPV--hITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIENTRvY` `:` `2fiq(C) : DASsCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPvHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIENTRvY` `_________________________________________________________________________________________225______234_________________25` `5___261_265_________277_________________________________________________________________________________________________` `2fiq(D) : EAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVlDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETvNLQGVDIPLG` `:` `2fiq(C) : EAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVlDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETvNLQGVDIPLG` `5___261_265_________277_________________________________________________________________________________________________` `_____________________________411__416____` `2fiq(D) : iSQYLPKQFERIQSGELSAIPHQLIdKIYDVLRAYRYGCAE` `:` `2fiq(C) : iSQYLPKQFERIQSGELSAIPHQLIdKIYDVLRAYRYGCA*` `_____________________________411__416____`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	3.6
Translation (A)	0.2
Closure (%)	92.6
Bending Residues ( green )	15 - 16 20 - 23 41 - 42 54 - 55 57 - 58 69 - 70 72 - 74 82 - 83 225 - 230 234 - 235 255 - 256 261 - 262 265 - 268 277 - 278 411 - 412 416 - 417
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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