Putative Atp-Dependent RNA Helicase Mj0669

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Atp-Dependent RNA Helicase Mj0669
  Conformer 1
(PDB) 		1hv8 (A)
  Conformer 2
(PDB) 		1hv8 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 197 0.25   5 - 207
2 152 0.77   208 - 363

Sequence


           ________________________________________________________________________________________________________________________ 
 1hv8(A) : VEYnFNELNLSDNILNAIRNKGFEKPTDIQkVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA 
         :                                                                                                                          
 1hv8(B) : VEYnFNELNLSDNILNAIRNKGFEKPTDIQkVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________207_________________________________________ 
 1hv8(A) : NIVVGTPGRILDHINRGTLNLKNVKYFILDEADElNgFIKDVEKILNACNKDKRILLFSATpREILNLAKKYgDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTK 
         :                                                                                                                          
 1hv8(B) : NIVVGTPGRILDHINRGTLNLKNVKYFILDEADElNgFIKDVEKILNACNKDKRILLFSATpREILNLAKKYgDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTK 
           ____________________________________________________________________________207_________________________________________ 

           _________________________________________________________________________________________________________________        
 1hv8(A) : RDTKELASlRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVsRGIDVNDLNCVINYHLPQNPESYhRIGRTGRAGKKGKAISIINRREYKKLRYIERAkLKIKKLK        
         :                                                                                                                          
 1hv8(B) : RDTKELASlRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVsRGIDVNDLNCVINYHLPQNPESYhRIGRTGRAGKKGKAISIINRREYKKLRYIERAkLKIKKLK        
           _________________________________________________________________________________________________________________        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.8
Translation
(A) 		-0.6
Closure
(%) 		99.6
Bending Residues
( green ) 		  207 - 208
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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