Pyruvate Kinase, Isozymes R/l

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pyruvate Kinase, Isozymes R/l
  Conformer 1
(PDB) 		1liw (A)
  Conformer 2
(PDB) 		1lix (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 411 0.44   59 - 160   263 - 571
2 100 0.52   161 - 262

Sequence


           ___________________________________________________________________________________________________158__________________ 
 1liw(A) : QQQQLPAAMADTFLEHLCLLDIDSEPVAARSTSIIATIGPASRSVERLKEMIKAGMNIARLNFSHGSHEYHAESIANVREAVESFAGSPLSYRPVAIALDTKGPEIRTGILQGGPESEVE 
         :                                                                                                                          
 1lix(C) : QQQQLPAAMADTFLEHLCLLDIDSEPVAARSTSIIATIGPASRSVERLKEMIKAGMNIARLNFSHGSHEYHAESIANVREAVESFAGSPLSYRPVAIALDTKGPEIRTGILQGGPESEVE 
           ___________________________________________________________________________________________________158__________________ 

           _____________________________________________________________________________256________________________________________ 
 1liw(A) : LVKGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPVGGRIYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGAQVDLPGLSEQDVRDLRFGVEHGVDIVFASFVRKASDVAA 
         :                                                                                                                          
 1lix(C) : LVKGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPVGGRIYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGA--dLPGLSEQDVRDLRFGVEHGVDIVFASFVRKASDVAA 
           _____________________________________________________________________________256________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1liw(A) : VRAALGPEGHGIKIISKIENHEGVKRFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMITKPRPMRAETSDVANAVLDGADCIMLSGETAKGNFPVE 
         :                                                                                                                          
 1lix(C) : VRAALGPEGHGIKIISKIENHEGVKRFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1liw(A) : AVKMQHAIAREAEAAVYHRQLFEELRRAAPLSRDPTEVTAIGAVEAAFKCCAAAIIVLTTTGRSAQLLSRYRPRAAVIAVTRSAQAARQVHLCRGVFPLLYREPPEAIWADDVDRRVQFG 
         :                                                                                                                          
 1lix(C) : AVKMQHAIAREAEAAVYHRQLFEELRRAAPLSRDPTEVTAIGAVEAAFKCCAAAIIVLTTTGRSAQLLSWYRPRAAVIAVTRSAQAARQVHLCRGVFPLLYREPPEAIWADDVDRRVQFG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________                                                                                    
 1liw(A) : IESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRVLSI                                                                                    
         :                                                                                                                          
 1lix(C) : IESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRVLSI                                                                                    
           _____________________________________                                                                                    

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.2
Translation
(A) 		-0.8
Closure
(%) 		66.3
Bending Residues
( green ) 		  158 - 161
  256 - 264
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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