DynDom - Protein Domain Motions

Rab Escort Protein 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Rab Escort Protein 1
Conformer 1 (PDB)	1ltx (R)
Conformer 2 (PDB)	1vg9 (C)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	395	1.03	5 - 270 359 - 608
2	86	0.82	271 - 358

Sequence

`________________________________________________________________________________________________________________________` `1ltx(R) : ADNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN----tENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQDkNRITYSQIIKEGR` `:` `1vg9(C) : DNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQD--rITYSQIIKEGR` `________________________________________________________________________________________________________________________` `_____________________________________________270________________________________________________________________________` `1ltx(R) : RFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTS` `:` `1vg9(C) : RFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTS` `_____________________________________________270________________________________________________________________________` `_____________358________________________________________________________________________________________________________` `1ltx(R) :` `--tSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLK` `:` `1vg9(C) :` `ETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLR` `_____________358________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1ltx(R) : TDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTCMSSKTAREDLERVVQKLFTPYTEIEeKPRLLWALYFNMRDSSDISRDCYNDLPSNVYVCSGPDSGLGNDNAVKQA` `:` `1vg9(C) : TDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTCMSSKTAREDLERVVQKLFTPYTE--eKPRLLWALYFNMRDSSDISRDCYNDLPSNVYVCSGPDSGLGNDNAVKQA` `________________________________________________________________________________________________________________________` `___________________________` `1ltx(R) : ETLFQQICPNEDF------pEDIVLD` `:` `1vg9(C) : ETLFQQICPNEDFCPAPPNPEDIVLDG` `___________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	13.1
Translation (A)	0.6
Closure (%)	79.0
Bending Residues ( green )	270 - 271 358 - 359
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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