Ras-Related C3 Botulinum Toxin Substrate 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ras-Related C3 Botulinum Toxin Substrate 3
  Conformer 1
(PDB) 		2ov2 (F)
  Conformer 2
(PDB) 		1mh1  
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 142 0.62   8 - 34   57 - 171
2 23 0.99   7 - 7   35 - 56

Sequence


           ________7_________________________34____________________56______________________________________________________________ 
 2ov2(F) : *SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 
         :                                                                                                                          
 1mh1    : GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 
           ________7_________________________34____________________56______________________________________________________________ 

           _______________________________________________________________                                                          
 2ov2(F) : LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG***                                                          
         :                                                                                                                          
 1mh1    : LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP                                                          
           _______________________________________________________________                                                          

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.8
Translation
(A) 		-0.2
Closure
(%) 		83.1
Bending Residues
( green ) 		  7 - 8
  34 - 35
  56 - 57
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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