Ras-Related Protein Rab-5a

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ras-Related Protein Rab-5a
  Conformer 1
(PDB) 		1tu4 (C)
  Conformer 2
(PDB) 		1r2q (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 133 2.01   21 - 39   60 - 177
2 20 5.32   40 - 59

Sequence


           _____________________37___________________58____________________________________________________________________________ 
 1tu4(C) : GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP-yYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 
         :                                                                                                                          
 1r2q(A) : GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 
           _____________________37___________________58____________________________________________________________________________ 

           __________________________________________________                                                                       
 1tu4(C) : ADLANKRAVDFQEAQSYADDNSLLF-eTSAKTS-nVNEIF-aIAKKLPK*                                                                       
         :                                                                                                                          
 1r2q(A) : ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN                                                                       
           __________________________________________________                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		122.8
Translation
(A) 		1.8
Closure
(%) 		96.9
Bending Residues
( green ) 		  37 - 40
  58 - 60
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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