Recombinase Cre

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Recombinase Cre
  Conformer 1
(PDB)
1pvp (A)
  Conformer 2
(PDB)
1q3u (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 195 1.79   134 - 328
2 108 0.62   22 - 129

Sequence


           ____________________________________________________________________________________________________________129_________ 
 1pvp(A) : TSDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFE 
         :                                                                                                                          
 1q3u(F) : *SDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFE 
           ____________________________________________________________________________________________________________129_________ 

           ________________________________________________________________________________________________________________________ 
 1pvp(A) : RTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRAAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSL 
         :                                                                                                                          
 1q3u(F) : RTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLST 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________                                      
 1pvp(A) : SALHGIFGATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAMVRLLED                                      
         :                                                                                                                          
 1q3u(F) : RALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAMVRLLED                                      
           ___________________________________________________________________________________                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.9
Translation
(A)
1.0
Closure
(%)
98.7
Bending Residues
( green )
  129 - 134
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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