Replication Protein A 70 Kda Dna-Binding Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replication Protein A 70 Kda Dna-Binding Subunit
  Conformer 1
(PDB) 		1fgu (B)
  Conformer 2
(PDB) 		1jmc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 122 2.4   289 - 418
2 104 1.48   185 - 288

Sequence


           _________________________________________________________________________________________________________288____________ 
 1fgu(B) : MSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC--------vQF 
         :                                                                                                                          
 1jmc(A) : **KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF 
           _________________________________________________________________________________________________________288____________ 

           ________________________________________________________________________________________________________________________ 
 1fgu(B) : DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ 
         :                                                                                                                          
 1jmc(A) : DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ 
           ________________________________________________________________________________________________________________________ 

           ______                                                                                                                   
 1fgu(B) : ALDGVS                                                                                                                   
         :                                                                                                                          
 1jmc(A) : ******                                                                                                                   
           ______                                                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		96.2
Translation
(A) 		2.1
Closure
(%) 		94.5
Bending Residues
( green ) 		  288 - 299
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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