Replication Protein E1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replication Protein E1
  Conformer 1
(PDB)
2gxa (H)
  Conformer 2
(PDB)
2gxa (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 1.1   372 - 575
2 61 0.19   311 - 371

Sequence


           _________________________________________________________________371____________________________________________________ 
 2gxa(H) : GSLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGI 
         :                                                                                                                          
 2gxa(A) : ****TEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGI 
           _________________________________________________________________371____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2gxa(H) : PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFR 
         :                                                                                                                          
 2gxa(A) : PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFR 
           ________________________________________________________________________________________________________________________ 

           __________________________________                                                                                       
 2gxa(H) : FEQPCTDESGEQPFNITDADWKSFFVRLWGRLDL                                                                                       
         :                                                                                                                          
 2gxa(A) : FEQPCTDESGEQPFNITDADWKSFFVRLWGRLDL                                                                                       
           __________________________________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.0
Translation
(A)
0.7
Closure
(%)
2.7
Bending Residues
( green )
  371 - 372
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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