Retinoid X Receptor-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Retinoid X Receptor-Alpha
  Conformer 1
(PDB) 		1lbd  
  Conformer 2
(PDB) 		1g5y (D)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 171 1.24   242 - 317   335 - 344   348 - 432
2 27 1.84   318 - 334   345 - 347   433 - 439

Sequence


           __________________________________________________________________________________________317______________334_______344 
 1lbd    : SANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGA 
         :                                                                                                                          
 1g5y(D) : ******PVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGA 
           __________________________________________________________________________________________317______________334_______344 

           _____________________________________________________________________________________432______________________________   
 1lbd    : IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT   
         :                                                                                                                          
 1g5y(D) : IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH***   
           _____________________________________________________________________________________432______________________________   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.6
Translation
(A) 		0.6
Closure
(%) 		96.4
Bending Residues
( green ) 		  317 - 318
  334 - 335
  344 - 345
  347 - 348
  432 - 433
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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