Reverse Transcriptase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Reverse Transcriptase
  Conformer 1
(PDB) 		1i6j (A)
  Conformer 2
(PDB) 		1d0e (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 225 0.76   25 - 66   75 - 100   110 - 171   178 - 272
2 23 1.69   67 - 74   101 - 109   172 - 177

Sequence


           ___________________________________________64________74_______________________100______109______________________________ 
 1i6j(A) : ***MTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGL 
         :                                                                                                                          
 1d0e(A) : GSHMTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGL 
           ___________________________________________64________74_______________________100______109______________________________ 

           _____________________________171__176___________________________________________________________________________________ 
 1i6j(A) : PPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA 
         :                                                                                                                          
 1d0e(A) : PPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA 
           _____________________________171__176___________________________________________________________________________________ 

           ___________________                                                                                                      
 1i6j(A) : QICQKQVKYLGYLLKEGQR                                                                                                      
         :                                                                                                                          
 1d0e(A) : QICQKQVKYLGYLLKEGQR                                                                                                      
           ___________________                                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.7
Translation
(A) 		-0.1
Closure
(%) 		99.8
Bending Residues
( green ) 		  64 - 67
  74 - 75
  100 - 101
  109 - 110
  171 - 172
  176 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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